Description of a new genus and species of Candonopsini (Crustacea, Ostracoda, Candoninae) from the alluvial valley of the Upper Paraná River (Brazil, South America)

The genus Candobrasilopsis gen. nov. is here described, with C. rochai gen. nov. sp. nov. as type species, from the alluvial valley of the Upper Paraná River. The enigmatic Candonopsis brasiliensis Sars, 1901 is here redescribed and transferred to this new genus, the new combination being Candobrasilopsis brasiliensis (Sars, 1901). The new candonid genus belongs to the tribe Candonopsini, because of the absence of the proximal seta on the caudal ramus. It is closely related to Latinopsis Karanovic & Datry, 2009, because of the relatively short terminal segment of the mandibular palp (length less than 1.5 times the basal width, while this segment is longer than three times the basal width in Candonopsis) and the large and stout b-seta on the T1. However, it differs markedly from Latinopsis in the size and shape of the calcified inner lamellae of both valves and in the type of hemipenis. We also discuss the doubtful allocation of several other genera to the Candonopsini, raise Abcandonopsis Karanovic, 2004 to generic status and reassess the uncertain position of Candonopsis anisitsi Daday, 1905 within Latinopsis

Extraordinary morphological changes in valve morphology during the ontogeny of several species of the Australian ostracod genus Bennelongia (Crustacea, Ostracoda)

Ostracods belonging to the genus Bennelongia differ much in valve morphology between adults and juveniles. Adult valves are asymmetrical, characterised by a beak-like feature in the anteroventral region of the left valve, and, with some notable exceptions, mostly have smooth or weaklyornamented valves. Juvenile specimens, on the other hand, have valves that are almost symmetrical, with no beak-like feature and are often heavily ornamented. We have examined the last 3 - 4 juvenile stages of 6 Bennelongia species from 5 different lineages, in order to decipher the types of external valve ornamentation and their recurrences during ontogeny and across lineages. It is clear that ornamentation is more prevalent at the early instar stages compared to the last 2 pre-adult stages, and especially when compared to the adult stage itself. We also examined the surprising presence of a calcified inner lamella with a prominent inner list in the pre-adult stages of Bennelongia species, that is usually absent in juveniles of other ostracods, thus questioning if heterochronic processes have provided an intermediate valve morphology between the simple (normal) cypridinid juvenile state and the heavily derived and modifi ed state of adult Bennelongia. We discuss the possible (speculative) functionality of the ornamentation in juveniles

Nine new species of Bennelongia De Deckker & McKenzie, 1981 (Crustacea, Ostracoda) from Western Australia, with the description of a new subfamily

The genus Bennelongia De Deckker & McKenzie, 1981 is most likely endemic to Australia and New Zealand and, up to now, only two described species in this genus had been reported from Western Australia. Extensive sampling in Western Australia revealed a much higher specifi c diversity. Here, we describe nine new species in three lineages, within the genus Bennelongia: B. cygnus sp. nov. and B. frumenta sp. nov. in the B. cygnus lineage, B. gwelupensis sp. nov., B. coondinerensis sp. nov., B. cuensis sp. nov., B. lata sp. nov. and B. bidgelangensis sp. nov. in the B. australis lineage, and B. strellyensis sp. nov. and B. kimberleyensis sp. nov. (from the Pilbara and Kimberley regions respectively) in the B. pinpi-lineage. For six of the nine species, we were also able to construct molecular phylogenies and to test for cryptic diversity with two different methods based on the evolutionary genetic species concept, namely Birky’s 4 x rule and the GYMC model. These analyses support the specifi c nature of at least four of the fi ve new species in the B. australis lineage and of the two new species in the B. pinpi lineage. We also describe Bennelongiinae n.subfam. to accommodate the genus. With the nine new species described here, the genus Bennelongia now comprises 15 species, but several more await formal description

On the Bennelongia barangaroo lineage (Crustacea, Ostracoda) in Western Australia, with the description of seven new species

The ostracod genus Bennelongia De Deckker & McKenzie, 1981 is endemic to Australia and New Zealand. Extensive sampling in Western Australia (WA) revealed a high specific and largely undescribed diversity. Here, we describe seven new species belonging to the B. barangaroo lineage: B. timmsi sp. nov., B. gnamma sp. nov., B. hirsuta sp. nov., B. ivanae sp. nov., B. mcraeae sp. nov., B. scanloni sp. nov. and B. calei sp. nov., and confirm the presence of an additional species, B. dedeckkeri, in WA. For five of these eight species, we could construct molecular phylogenies and parsimonious networks based on COI sequences. We also tested for cryptic diversity and specific status of clusters with a statistical method based on the evolutionary genetic species concept, namely Birky’s 4 theta rule. The analyses support the existence of these five species and a further three cryptic species in the WA B. barangaroo lineage. The molecular evidence was particularly relevant because most species described herein have very similar morphologies and can be distinguished from each other only by the shape, size and position of the antero-ventral lapel on the right valve, and, in sexual populations, by the small differences in shape of the hemipenes and the prehensile palps in males. Four species of the WA B. barangaroo lineage occur in small temporary rock pools (gnammas) on rocky outcrops. The other four species are mainly found in soft bottomed seasonal water bodies. One of the latter species, B. scanloni sp. nov., occurs in both claypans and deeper rock pools (pit gnammas). All species, except for B. dedeckkeri, originally described from Queensland, have quite clearly delimited distributions in WA. With the seven new species described here, the genus Bennelongia now comprises 25 nominal species but several more await formal description

A review of Bennelongia De Deckker & McKenzie, 1981 (Crustacea, Ostracoda) species from eastern Australia with the description of three new species

Australia is predicted to have a high number of currently undescribed ostracod taxa. The genus Bennelongia De Deckker & McKenzie, 1981 (Crustacea, Ostracoda) occurs in Australia and New Zealand, and has recently shown potential for high speciosity, after the description of nine new species from Western Australia. Here, we focus on Bennelongia from eastern Australia, with the objectives of exploring likely habitats for undiscovered species, genetically characterising published morphological species and scanning classical species for cryptic diversity. Two traditional (morphological) species are confi rmed to be valid using molecular evidence (B. harpago De Deckker & McKenzie, 1981 and B. pinpi De Deckker, 1981), while three new species are described using both morphological and molecular evidence. Two of the new species belong to the B. barangaroo lineage (B. dedeckkeri sp. nov. and B. mckenziei sp. nov.), while the third is a member of the B. nimala lineage (B. regina sp. nov.). Another species was found to be genetically distinct, but is not formally described here owing to a lack of distinguishing morphological features from the existing species B. cuensis Martens et al., 2012. Trends in diversity and radiation of the genus are discussed, as well as implications these results have for the conservation of temporary pool microfauna and our understanding of Bennelongia’s evolutionary origin

New insight in lymnaeid snails (Mollusca, Gastropoda) as intermediate hosts of Fasciola hepatica (Trematoda, Digenea) in Belgium and Luxembourg

<b>Background</b><p></p> The present study aims to assess the epidemiological role of different lymnaeid snails as intermediate hosts of the liver fluke Fasciola hepatica in Belgium and Luxembourg.<p></p> <b>Methods</b><p></p> During summer 2008, 7103 lymnaeid snails were collected from 125 ponds distributed in 5 clusters each including 25 ponds. Each cluster was located in a different biogeographic area of Belgium and Luxembourg. In addition, snails were also collected in sixteen other biotopes considered as temporary wet areas. These snails were identified as Galba truncatula (n = 2474) (the main intermediate host of F. hepatica in Europe) and Radix sp. (n = 4629). Moreover, several biological and non-biological variables were also recorded from the different biotopes. DNA was extracted from each snail collected using Chelex® technique. DNA samples were screened through a multiplex PCR that amplifies lymnaeid internal transcribed spacer 2 gene sequences (500–600 bp) (acting as an internal control) and a 124 bp fragment of repetitive DNA from Fasciola sp.<p></p> <b>Results</b><p></p> Lymnaeid snails were found in 75 biotopes (53.2%). Thirty individuals of G. truncatula (1.31%) and 7 of Radix sp. (0.16%) were found to be positive for Fasciola sp. The seven positive Radix sp. snails all belonged to the species R. balthica (Linnaeus, 1758). Classification and regression tree analysis were performed in order to better understand links and relative importance of the different recorded factors. One of the best explanatory variables for the presence/absence of the different snail species seems to be the geographic location, whereas for the infection status of the snails no obvious relationship was linked to the presence of cattle.<p></p> <b>Conclusions</b><p></p> Epidemiological implications of these findings and particularly the role of R. balthica as an alternative intermediate host in Belgium and Luxembourg were discussed

Editorial : Launch of the European Journal of Taxonomy (EJT)

We are very pleased and proud to announce the launch of the European Journal of Taxonomy. The EJT is an international, online, fast-track, peer-reviewed, open access journal in descriptive taxonomy,covering subjects in zoology, entomology, botany, and palaeontology, owned and run by a Consortium of European Natural History Institutes. EJT is a collaborative project outcome of the EDIT network

A simulated annealing optimization of audio features for drum classification

Current methods for the accurate recognition of instruments within music are based on discriminative data descriptors. These are features of the music fragment that capture the characteristics of the audio and suppress details that are redundant for the problem at hand. The extraction of such features from an audio signal requires the user to set certain parameters. We propose a method for optimizing the parameters for a particular task on the basis of the Simulated Annealing algorithm and Support Vector Machine classification. We show that using an optimized set of audio features improves the recognition accuracy of drum sounds in music fragments

Computational assessment of the feasibility of protonation-based protein sequencing

Recent advances in DNA sequencing methods revolutionized biology by providing highly accurate reads, with high throughput or high read length. These read data are being used in many biological and medical applications. Modern DNA sequencing methods have no equivalent in protein sequencing, severely limiting the widespread application of protein data. Recently, several optical protein sequencing methods have been proposed that rely on the fluorescent labeling of amino acids. Here, we introduce the reprotonation-deprotonation protein sequencing method. Unlike other methods, this proposed technique relies on the measurement of an electrical signal and requires no fluorescent labeling. In reprotonation-deprotonation protein sequencing, the terminal amino acid is identified through its unique protonation signal, and by repeatedly cleaving the terminal amino acids one-by-one, each amino acid in the peptide is measured. By means of simulations, we show that, given a reference database of known proteins, reprotonation-deprotonation sequencing has the potential to correctly identify proteins in a sample. Our simulations provide target values for the signal-to-noise ratios that sensor devices need to attain in order to detect reprotonation-deprotonation events, as well as suitable pH values and required measurement times per amino acid. For instance, an SNR of 10 is required for a 61.71% proteome recovery rate with 100 ms measurement time per amino acid